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franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://franciscozorrilla.github.io/metaGEM/
MIT License
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feat: add drep for dereplicating MAGs across samples #68

Closed franciscozorrilla closed 2 years ago

franciscozorrilla commented 3 years ago

Add rule to Snakefile for dereplicating MAGs:

dRep dereplicate output_directory -g path/to/genomes/*.fasta

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