:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
mOTUs2 was originally used to assign taxonomy to MAGs + used in the manuscript to compare abundances calculated by metaGEM, however the rule in the Snakefile seems to have been lost/dropped after switching to GTDB-Tk. We should re-introduce two mOTUs2 rules:
Rule mOTUs2tax: Alternative taxonomy assignment for MAGs
Rule mOTUs2profile: Quick profiling of metagenomic sample
mOTUs2was originally used to assign taxonomy to MAGs + used in the manuscript to compare abundances calculated bymetaGEM, however the rule in the Snakefile seems to have been lost/dropped after switching to GTDB-Tk. We should re-introduce twomOTUs2rules:mOTUs2tax: Alternative taxonomy assignment for MAGsmOTUs2profile: Quick profiling of metagenomic sample