:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
The --parallel flag is used by default in the Snakefile rule for reassembly. The flag should be removed if the number of genomes is less than the number of cores provided, otherwise only one thread is used per genome and the rest are wasted.
The
--parallelflag is used by default in the Snakefile rule for reassembly. The flag should be removed if the number of genomes is less than the number of cores provided, otherwise only one thread is used per genome and the rest are wasted.