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franciscozorrilla / metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
https://franciscozorrilla.github.io/metaGEM/
MIT License
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refactor: modify crossMap/concoct rule inputs and outputs #77

Closed franciscozorrilla closed 2 years ago

franciscozorrilla commented 3 years ago

Snakemake cannot currently resolve dependencies when trying to submit jobs from qfilter -> binReassemble due to missing concoct input. crossMap rule produces folder output, but concoct rule takes in file as input