:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
In combination with the CrossMapParallel workflow, the 'rule metabat' has to be used (instead of metabatCross).
This rule failed due to a 'too many positional arguments' error in metabat2.
The current interfact of metabat2 does not support to directly supply mapping files.
Instead, the mapping file is first converted to a depth file, the latter is used then directly with metabat2.
In combination with the CrossMapParallel workflow, the 'rule metabat' has to be used (instead of metabatCross). This rule failed due to a 'too many positional arguments' error in metabat2. The current interfact of metabat2 does not support to directly supply mapping files. Instead, the mapping file is first converted to a depth file, the latter is used then directly with metabat2.