Input 0 of layer "batch_normalization" is incompatible with the layer: expected ndim=4, found ndim=5. Full shape received: (None, None, None, None, 32)

frankkramer-lab / MIScnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

GNU General Public License v3.0

402 stars 116 forks source link

Open aleemsidra opened 2 years ago

aleemsidra commented 2 years ago

Can you please let me know, what I am getting this error? How to fix it?

Thanks, Sidra

muellerdo commented 2 years ago

Hey @aleemsidra,

it seems to be that you try to run 2D code with 3D data?

Please provide more information to debug like a full error log or a reproducible example.

Cheers, Dominik

aleemsidra commented 2 years ago

Hi @muellerdo

Thanks for your response.

The below image shows the preprocessing step of data load

The below image shows the neural network.

Below image for the structure of data (we downloading kits 2019 Github)

Waiting for your response.

Thanks, Sidra

muellerdo commented 2 years ago

Hey @aleemsidra,

sorry for the late response.

Could you please also add another screenshot of the Preprocessor?

And is this the KiTS19 Notebook from the examples?

Cheers, Dominik