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frankkramer-lab / aucmedi

a framework for Automated Classification of Medical Images
https://frankkramer-lab.github.io/aucmedi/
GNU General Public License v3.0
38 stars 12 forks source link

pathology slide interface with samplify? #207

Open muellerdo opened 1 year ago

muellerdo commented 1 year ago

https://github.com/MIC-DKFZ/samplify

Deathlymad commented 1 year ago

As far as I can tell, samplify only samples from a pre-existing ArrayLike. While this is useful, it doesn't handle chunk IO that is advantageous when working with large image slides. It is possible to load slides and then sample them with this API but that would bring with itself larger memory requirements unless it is connected to the chunking and the ArrayLike resolves the data accordingly.