potentially makes gsea optional

frankligy / scTriangulate

scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled clustering solutions

MIT License

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potentially makes gsea optional #16

Open frankligy opened 2 years ago

frankligy commented 2 years ago

right now gsea run is required, but actually it is not part of the core algorithm of scTriangulate but just for visuliazation purpouse.

frankligy commented 2 years ago

As Misha suggested, I can change the gseapy codebase so that it doesn't require network connection

frankligy commented 2 years ago

https://github.com/michael-kotliar/GSEApy/commit/6135cb9f0618f293b2f7586b81d56d97f3040c46