search

franklyn86 / snofyre

Automatically exported from code.google.com/p/snofyre
0 stars 0 forks source link

'Concept not found' exception when running a query #28

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?
1. Generate 16,000 patients with a subtype of anaemia, in 4 batches of 4,000 
each
2. Query for all patients with some anaemia

What is the expected output? 

A list of 16,000 patient IDs

What do you see instead?

(after a long pause) an error message:

uk.nhs.cfh.dsp.snomed.objectmodel.error.ConceptNotFoundException: No matching 
concept found for concept ID - {116676008

Version Information:
 -- Snofyre version       : patched 1.1.0
 -- Operating System      : Win7 64-bit
 -- MySQL Server version  : 5.5.8 community
 -- SNOMED Release        : October 2010 UK data

Original issue reported on code.google.com by jeremy.r...@googlemail.com on 21 Jan 2011 at 12:14

Attachments:

GoogleCodeExporter commented 9 years ago 
Export of generated data...

Original comment by jeremy.r...@googlemail.com on 21 Jan 2011 at 12:19

Attachments:

GoogleCodeExporter commented 9 years ago 
This looks like a parsing error... Looks like when compositional grammar is 
being read, the { is being left in place... Concept 116676008 definitely 
exists. A temporary work around would to strip all concept ids passed to 
TerminologyConceptUtils of any non digits characters!

Original comment by jay.kola on 21 Jan 2011 at 4:56

GoogleCodeExporter commented 9 years ago 
Resolved temporarily by adding stripping concept id passed of any non digits... 
but need to trace the parsing error.

Instructions:
Shutdown/close Snofyre.
Download patch and copy to lib folder.
Restart Snofyre and verify if this has fixes the error...

Original comment by jay.kola on 22 Jan 2011 at 7:18

Attachments: