search

frankvogt / vcf2gwas

Python API for comprehensive GWAS analysis using GEMMA
GNU General Public License v3.0
84 stars 29 forks source link

Issue installing vcf2gwas in Docker #11

Closed hangphan closed 2 years ago

hangphan commented 2 years ago

Hi, thanks for creating the nice package. I tried installing this in a docker image but got the following error. Could you please help trouble-shooting? Is it possible to set the requirements so that they're not fixed to a version but any version after that, e.g. Python version >=3.9? Thanks

image
frankvogt commented 2 years ago

Hi, I am sorry for the delay. I created a docker image so now vcf2gwas can be easily run in docker. Just pull the image with docker pull fvogt257/vcf2gwas and run vcf2gwas normally by replacing in every command vcf2gwas with docker run -v /path/to/current-working-directory/:/vcf2gwas/ fvogt257/vcf2gwas.