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frankvogt / vcf2gwas

Python API for comprehensive GWAS analysis using GEMMA
GNU General Public License v3.0
84 stars 29 forks source link

Check for a vcf index before indexing #26

Closed kdm9 closed 1 year ago

kdm9 commented 1 year ago

Hi Frankie,

The attached simple patch checks for X.vcf.gz.csi before running bcftools index on the input vcf

Cheers, K

frankvogt commented 1 year ago

Thanks!