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frankvogt / vcf2gwas

Python API for comprehensive GWAS analysis using GEMMA
GNU General Public License v3.0
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threshold line in the Manhattan plot #3

Closed vinod1981 closed 3 years ago

vinod1981 commented 3 years ago

Hi, Is it possible to just have a significance threshold line in the Manhattan plot but not to label them? Because it is annoying when I have a lot of significant SNPs and the program takes endless time in finishing the labeling. But I am interested to put a threshold line in the Manhatttan plot which is important to see the SNPs passing the threshold. Thanks, Vinod,

frankvogt commented 3 years ago

I added the option -nl / --nolabel to remove the labels of the significant SNPs in the manhattan plot

frankvogt commented 3 years ago

update the package with "conda update vcf2gwas -c bioconda -c conda-forge -c fvogt257" and it should work

vinod1981 commented 3 years ago

Thank you very much Frank for this update. I appreciate it.

Vinod,