Working in WLS, everything is fine with the installation. When trying to do the test vcf2gwas -v test
`(MeeGWAS) geopela@DESKTOP-6PPEBFK:~$ vcf2gwas -v test
vcf2gwas v0.8.9
Initialising..
Copying example input files to current working directory..
Copying README and LICENSE files..
Defaulting to user installation because normal site-packages is not writeable
Requirement already satisfied: umap-learn in ./.local/lib/python3.8/site-packages (0.5.6)
Requirement already satisfied: numpy>=1.17 in ./.local/lib/python3.8/site-packages (from umap-learn) (1.24.3)
Requirement already satisfied: scipy>=1.3.1 in ./.local/lib/python3.8/site-packages (from umap-learn) (1.5.0)
Requirement already satisfied: scikit-learn>=0.22 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.23.1)
Requirement already satisfied: numba>=0.51.2 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.58.1)
Requirement already satisfied: pynndescent>=0.5 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.5.12)
Requirement already satisfied: tqdm in ./.local/lib/python3.8/site-packages (from umap-learn) (4.66.2)
Requirement already satisfied: llvmlite<0.42,>=0.41.0dev0 in ./.local/lib/python3.8/site-packages (from numba>=0.51.2->umap-learn) (0.41.1)
Requirement already satisfied: importlib-metadata in ./.local/lib/python3.8/site-packages (from numba>=0.51.2->umap-learn) (7.0.1)
Requirement already satisfied: joblib>=0.11 in ./.local/lib/python3.8/site-packages (from pynndescent>=0.5->umap-learn) (0.15.1)
Requirement already satisfied: threadpoolctl>=2.0.0 in ./.local/lib/python3.8/site-packages (from scikit-learn>=0.22->umap-learn) (2.1.0)
Requirement already satisfied: zipp>=0.5 in /usr/lib/python3/dist-packages (from importlib-metadata->numba>=0.51.2->umap-learn) (1.0.0)
Traceback (most recent call last):
File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/utils.py", line 71, in
import umap
ModuleNotFoundError: No module named 'umap'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/starter.py", line 23, in
from vcf2gwas.utils import *
File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/utils.py", line 74, in
import umap
ModuleNotFoundError: No module named 'umap'`
Working in WLS, everything is fine with the installation. When trying to do the test
vcf2gwas -v test`(MeeGWAS) geopela@DESKTOP-6PPEBFK:~$ vcf2gwas -v test
vcf2gwas v0.8.9
Initialising..
Copying example input files to current working directory.. Copying README and LICENSE files.. Defaulting to user installation because normal site-packages is not writeable Requirement already satisfied: umap-learn in ./.local/lib/python3.8/site-packages (0.5.6) Requirement already satisfied: numpy>=1.17 in ./.local/lib/python3.8/site-packages (from umap-learn) (1.24.3) Requirement already satisfied: scipy>=1.3.1 in ./.local/lib/python3.8/site-packages (from umap-learn) (1.5.0) Requirement already satisfied: scikit-learn>=0.22 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.23.1) Requirement already satisfied: numba>=0.51.2 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.58.1) Requirement already satisfied: pynndescent>=0.5 in ./.local/lib/python3.8/site-packages (from umap-learn) (0.5.12) Requirement already satisfied: tqdm in ./.local/lib/python3.8/site-packages (from umap-learn) (4.66.2) Requirement already satisfied: llvmlite<0.42,>=0.41.0dev0 in ./.local/lib/python3.8/site-packages (from numba>=0.51.2->umap-learn) (0.41.1) Requirement already satisfied: importlib-metadata in ./.local/lib/python3.8/site-packages (from numba>=0.51.2->umap-learn) (7.0.1) Requirement already satisfied: joblib>=0.11 in ./.local/lib/python3.8/site-packages (from pynndescent>=0.5->umap-learn) (0.15.1) Requirement already satisfied: threadpoolctl>=2.0.0 in ./.local/lib/python3.8/site-packages (from scikit-learn>=0.22->umap-learn) (2.1.0) Requirement already satisfied: zipp>=0.5 in /usr/lib/python3/dist-packages (from importlib-metadata->numba>=0.51.2->umap-learn) (1.0.0) Traceback (most recent call last): File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/utils.py", line 71, in
import umap
ModuleNotFoundError: No module named 'umap'
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/starter.py", line 23, in
from vcf2gwas.utils import *
File "/home/geopela/miniconda3/envs/MeeGWAS/lib/python3.9/site-packages/vcf2gwas/utils.py", line 74, in
import umap
ModuleNotFoundError: No module named 'umap'`