Hi,
I am having this error after updating vcf2gwas.
Traceback (most recent call last):
File "/vol/cluster-data/vkumar/miniconda3/envs/myenv/lib/python3.9/site-packages/vcf2gwas/starter.py", line 139, in <module>
if geno_pca_switch == True:
NameError: name 'geno_pca_switch' is not defined
vcf2gwas is working fine without pca but once the covariates are added it is giving this error. I have checked the name and they are completely fine and matching with each other in all the file.
And also the -sv option is not responding to the value given in the script. Please have a look into it.
Hi, I am having this error after updating vcf2gwas.
vcf2gwas is working fine without pca but once the covariates are added it is giving this error. I have checked the name and they are completely fine and matching with each other in all the file.
And also the -sv option is not responding to the value given in the script. Please have a look into it.
Thanks,
Vinod,