search

frankyeh / DSI-Studio

A Tractography Tool for Diffusion MRI
http://dsi-studio.labsolver.org
Other
118 stars 54 forks source link

Error using singularity: 'FATAL: no executable dsi_studio found' #48

Closed jnecus closed 3 years ago

jnecus commented 3 years ago

Hello,

I posted this on website discussion but wasn't sure whether that forum is still in use. Sorry for the repost if so.

I am trying execute command line dsi_studio via singularity. I have pulled the singularity file but when running the lines below I get the following error:

singularity pull docker://dsistudio/dsistudio
singularity exec dsistudio_latest.sif dsi_studio --action=rec --source=my.src.gz --thread_count=4 --method=7 --param0=1.7  #command line

WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating FATAL: no executable dsi_studio found

frankyeh commented 3 years ago

https://github.com/hpcng/singularity/issues/2737

On Sat, Jan 2, 2021 at 8:08 AM jnecus notifications@github.com wrote:

Hello,

I posted this on website discussion but wasn't sure whether that forum is still in use. Sorry for the repost if so.

I am trying execute command line dsi_studio via singularity. I have pulled the singularity file but when running the lines below I get the following error:

singularity pull docker://dsistudio/dsistudio singularity exec dsistudio_latest.sif dsi_studio --action=rec --source=my.src.gz --thread_count=4 --method=7 --param0=1.7 #command line

WARNING: passwd file doesn't exist in container, not updating WARNING: group file doesn't exist in container, not updating FATAL: no executable dsi_studio found

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/frankyeh/DSI-Studio/issues/48, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACDI4NBLUJ4DCFUQ4TU2UTSX4LF5ANCNFSM4VRBQ2BQ .

jnecus commented 3 years ago

This has been resolved. It was a local cluster issue with Singularity. Thanks for the reply, Frank.