search

frankyeh / DSI-Studio

A Tractography Tool for Diffusion MRI
http://dsi-studio.labsolver.org
Other
122 stars 54 forks source link

Warning: --track_count is not used. Please check command line syntax. #51

Closed JohannesWiesner closed 3 years ago

JohannesWiesner commented 3 years ago

As described on the documentation page, I am using the --track_count argument for dsi_studio --action=trk

Whole brain fiber tracking

dsi_studio --action=src --source=./dwi.nii.gz --bval=./bval --bvec=./bvec --output=./my.src.gz dsi_studio --action=rec --source=./my.src.gz --method=4 --param0=1.25 # 4:GQI reconstruction dsi_studio --action=trk --source=./my.src.gz.gqi.1.25.fib.gz --track_count=10000000

However, I get the following error:

Warning: --track_count is not used. Please check command line syntax.

Instead, dsi_studio --action=trk seems to use the fiber_count argument? --track_count seems to exist only for dsi_studio --action=atk? Are those equivalent?

frankyeh commented 3 years ago

I am sorry for the mistake in the documentation (corrected). It should be "fiber_count" as used in --action=trk http://dsi-studio.labsolver.org/Manual/command-line-for-dsi-studio#TOC-Fiber-tracking

As for atk, it is now using "--track_voxel_ratio" instead of the old "--track_count"

I am sorry for the hassle caused by this errorous information. Best regards, Frank

On Mon, Apr 19, 2021 at 10:30 AM JohannesWiesner @.***> wrote:

As described on the documentation page http://dsi-studio.labsolver.org/Manual/command-line-for-dsi-studio, I am using the --track_count argument for dsi_studio --action=trk

Whole brain fiber tracking

dsi_studio --action=src --source=./dwi.nii.gz --bval=./bval --bvec=./bvec --output=./my.src.gz dsi_studio --action=rec --source=./my.src.gz --method=4 --param0=1.25 # 4:GQI reconstruction dsi_studio --action=trk --source=./my.src.gz.gqi.1.25.fib.gz --track_count=10000000

However, I get the following error:

Warning: --track_count is not used. Please check command line syntax.

Instead, dsi_studio --action=trk seems to use the fiber_count argument? --track_count seems to exist only for dsi_studio --action=atk? Are those equivalent?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/frankyeh/DSI-Studio/issues/51, or unsubscribe https://github.com/notifications/unsubscribe-auth/AACDI4NYQHINPSSGLUJWNTLTJQ47RANCNFSM43F6LQ6A .

JohannesWiesner commented 3 years ago

Hi Frank, no worries! That's exactly why it's good to have GitHub! Keep up the good work! (Feel free to close this issue).

Greetings,

Johannes