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frattalab / PAPA

PAPA (Pipeline-Alternative Polyadenylation) - Snakemake pipeline for analysis of APA from short-read RNA-seq data
GNU General Public License v3.0
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Move to paramspace and wrapper script to call stringtie with different parameter combos #13

Closed SamBryce-Smith closed 2 years ago

SamBryce-Smith commented 3 years ago

Need to use script: "x.py" and access paramspace via snakemake inside the python script. This script would take the parameter values and call Stringtie via subprocess/os.system.

Much more conventional than my hacky method, plus can have nicer directory names (e.g. combined within a single dirname not multiple subdirs)

SamBryce-Smith commented 2 years ago

closing as probably not going to support multiple parameter choices in the future