Add minimum extension length filter to filter_tx_by_intron_chain.py

frattalab / PAPA

PAPA (Pipeline-Alternative Polyadenylation) - Snakemake pipeline for analysis of APA from short-read RNA-seq data

GNU General Public License v3.0

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Closed SamBryce-Smith closed 2 years ago

SamBryce-Smith commented 2 years ago

closes #19

Splits out general PyRanges utility functions (get_regions*, add_region_number etc.) to papa_utilities.py so they can be used in the other scripts
Add a minimum length filter for extension events. Extension events that miss the cut-off are labelled as invalid with a specific key noting that they failed the min cut-off.