Closed SamBryce-Smith closed 1 year ago
read_gtf_specific already extracts the gene name by default. The problem is in get_novel_last_exons.py
, which removes the gene_name attribute from the reference PyRanges object when trying to reduce the number of columns. Simple fix is to add 'gene_name' to these lists.
Resolved as of 017e851. Was a little more involved than expected...
This probably means modifying read_gtf_specific so it also extracts 'gene_name' (by default)