Meta-issue - tidying up output GTFs

frattalab / PAPA

PAPA (Pipeline-Alternative Polyadenylation) - Snakemake pipeline for analysis of APA from short-read RNA-seq data

GNU General Public License v3.0

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Open SamBryce-Smith opened 1 year ago

SamBryce-Smith commented 1 year ago

Collection of points to address for cleaning up GTFs:

gene IDs are duplicated when have multiple transcripts sharing a boundary with novel last exons. should switch to a 'g1;g2 tx1_g1,tx2_g1;tx1_g2,tx2_g2' kind of approach