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PAPA
PAPA (Pipeline-Alternative Polyadenylation) - Snakemake pipeline for analysis of APA from short-read RNA-seq data
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Meta-issue - tidying up output GTFs
#37
Open
SamBryce-Smith
opened
1 year ago
SamBryce-Smith
commented
1 year ago
Collection of points to address for cleaning up GTFs:
gene IDs are duplicated when have multiple transcripts sharing a boundary with novel last exons. should switch to a 'g1;g2 tx1_g1,tx2_g1;tx1_g2,tx2_g2' kind of approach
Collection of points to address for cleaning up GTFs: