Add missing packages to requirements.txt

frederikkemarin / BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks

BSD 3-Clause "New" or "Revised" License

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Open tdsone opened 7 months ago

tdsone commented 7 months ago

On OSX, you run into the following error when trying to run python scripts/download_bend.py:

bs4.FeatureNotFound: Couldn't find a tree builder with the features you requested: lxml. Do you need to install a parser library?

This can be fixed by adding lxml to the requirement.txt file.

tdsone commented 7 months ago

For running precompute_embeddings.py two more packages are missing: h5py and pysam