Closed tdsone closed 4 weeks ago
Hello,
Yes I understand your confusion. The values given in the start
and end
columns here already include the flank. The flank columns are provided just for extra information on the size of the flank added on each side. When fetching therefore only use the start
and end
columns.
If you still have questions please reach out.
Hey there!
I've been unsure about the use of the flanking parameter in the
fetch
method of theFasta
class. I would have expected that flank_left and flank_right from the datasets (e.g. for the gene_finding task [1]) are used in the fetch method with the flank parameter. But two things confuse me: 1) it's never done, nor can I find any other use of flank_left and flank_right in the code and 2) the flank parameter is applied symmetrically while flank left and right are unequal values.Thanks for your help :)
[1] Gene Finding Data with flank_left and flank_right