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frederikkemarin / BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks
BSD 3-Clause "New" or "Revised" License
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Publication of Predictions on Gene Finding Task #67

Open zsewa opened 1 month ago

zsewa commented 1 month ago

Hi, First of all, thanks for your benchmark.

I am interested in the raw outputs (predictions) of the methods, especially for the Gene Finding task. As I prefer to avoid retraining the CNNs, is there any chance you could provide us with the predictions or, alternatively, the model weights?

Thanks!

frederikkemarin commented 4 weeks ago

Hello, I will check if I still have the raw predictions saved. If I don't it is possible that I can regenerate som of them for you.

Are there any you are particularly interested in.

zsewa commented 3 weeks ago

Hi Frederikke, Thank you very much. I would be particularly interested in NT-MS, NT-v2, GENA-LM BERT, the ResNet model, and HyenaDNA large.