What data to use for skills course?

fredhutchio / rnaseq

UNDER CONSTRUCTION: concepts and skills related to RNAseq analyses

https://fredhutchio.github.io/rnaseq/

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Open k8hertweck opened 3 years ago

k8hertweck commented 3 years ago

mouse and/or human (one for in-class, another for challenge exercises)
subset by extracting only one chromosome, or a set of genes
where to obtain reference data? Whole genome or custom set? Shared location or each person download on their own?

k8hertweck commented 3 years ago

Ideally a two way comparison, 3x3 treatments, 2 pass.

k8hertweck commented 3 years ago

Reanalysis of mouse ENCODE data, which explores batch effects, species comparisons, and tissue comparisons