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freesunshine0316 / dep-forest-re

Code corresponding to our paper "Leveraging Dependency Forest for Neural Medical Relation Extraction" at EMNLP 2019
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experimental data #1

Open sdzhangbo opened 4 years ago

sdzhangbo commented 4 years ago

This paper inspired me a lot. However, I got some trouble when I try to follow your work, because I can not obtain the experimental data, BioCreative VI CPR and Phenotype-Gene relation on the Internet (the link of data in the paper cannot be opened). Could you please send me the experimental data?

freesunshine0316 commented 4 years ago

Thanks for being interested in our work. You may download the data through https://www.cs.rochester.edu/u/lsong10/downloads/cpr.zip and https://www.cs.rochester.edu/u/lsong10/downloads/pgr.zip I also attach my script for preprocessing. It uses handle rules to pre-tokenize some special entities, which cannot be tokenized by a standard tokenizer. But, we just realized recently that this could be done in a smarter way that simply pre-tokenize using the provided character-based position information. You may improve this tokenizer for better performances.

sdzhangbo commented 4 years ago

I have downloaded the experimental data through the links above. Thank you so much for your detailed help and kind suggestions on preprocessing.

ysn7 commented 3 years ago

Sorry to disturb you, I am very interested in your work, but I can't open the above URL to get the data, can you provide the data again？Thank you very mucn.

freesunshine0316 commented 3 years ago

I'll try to upload the data somewhere else later on.

ysn7 commented 3 years ago

I'll try to upload the data somewhere else later on.

thank you very much. Did you upload successfully?