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freesurfer
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surfa
Python utilities for medical image and surface-based analysis
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added curvature support in freeview and some other minor bug fix
#40
silencer1127
opened
1 week ago
0
Created guide for labels
#39
jnolan14
closed
1 week ago
0
Fixed bug in LabelLookup.extract
#38
jnolan14
closed
1 week ago
0
LabelRecoder invert method
#37
jnolan14
closed
1 week ago
0
Build issue on macbook
#36
RishikGupta28
opened
1 month ago
2
complex64 support
#35
yhuang43
closed
1 month ago
2
Added 'reshape_on_bbox' method to the FramedImage class
#34
jnolan14
closed
1 month ago
2
fix FSNifti1Extension
#33
yhuang43
closed
2 months ago
0
Update pyproject.toml
#32
avnishks
closed
2 months ago
0
Installation issues with numpy 2.0
#31
rkm
closed
2 months ago
2
Store FreeSurfer NIfTI extension when saving warp.
#30
mu40
closed
2 months ago
0
fix random_affine(), compose_affine(), angles_to_rotation_matrix()
#29
yhuang43
closed
2 months ago
1
Distribute via conda as well?
#28
seannz
opened
5 months ago
0
add Freesurfer Nifti1 header extension handling in NiftiArrayIO
#27
yhuang43
closed
5 months ago
4
Use default spacing 1 for compatibility with FreeSurfer.
#26
mu40
closed
6 months ago
5
Convert affine matrix to warp field.
#25
mu40
closed
6 months ago
0
Declare memory views `const` to support read-only buffers.
#24
mu40
closed
6 months ago
0
Build on Yujing's work, derive `Warp` from `FramedImage`.
#23
mu40
closed
6 months ago
0
reconstruct FrameImage, Affine, DeformField
#22
yhuang43
closed
7 months ago
2
introduce class DeformField to support mgzwarp
#21
yhuang43
closed
7 months ago
9
Fix NumPy deprecation warning.
#20
mu40
closed
8 months ago
0
support mgz warp
#19
yhuang43
closed
8 months ago
0
Fix bug preventing affine creation from (N, N+1) matrix.
#18
mu40
closed
9 months ago
0
Install on windows
#17
rasoulisaeid
opened
9 months ago
1
more 'pythonic' implementation for calculation of vox2vxm matrix
#16
jnolan14
closed
1 year ago
0
fixed vox2vxm transform calculation
#15
jnolan14
closed
1 year ago
0
slightly improve nifti IO
#14
ahoopes
closed
1 year ago
0
Transform features and more
#13
ahoopes
closed
1 year ago
0
revert change in setup.py
#12
jnolan14
closed
1 year ago
0
freeview.py kwargs handling fix
#11
jnolan14
closed
1 year ago
0
Numpy has no attribute 'int' error during resampling
#10
ahoopes
closed
1 year ago
1
Make version-checking compatible with updated Packaging library.
#9
avnishks
closed
1 year ago
1
Fixed bug in pipeline.py and exposed it in top level __init__
#8
jnolan14
closed
1 year ago
0
Geometry awareness when applying deformations
#7
ahoopes
closed
1 year ago
0
added in utils dir with CommandPipeline class
#6
jnolan14
closed
1 year ago
0
added feature to crop multiple volumes to the same bboxAdded optional…
#5
jnolan14
closed
1 year ago
1
hardcoded pixdim[0] doesn't follow standard
#4
pieper
closed
1 year ago
2
image.conform issue
#3
DrYaoBrain
opened
2 years ago
1
#BF. Correct for dimension mismatch between target_shape and image.baseshape
#2
avnishks
closed
1 year ago
6
legacy support for fit_to_shape
#1
jnolan14
closed
2 years ago
0