I modified main_bam_pipeline.sh to have some sentences in the log, and the bam quality check at the end.
I'm having problems in push/pull from the cluster.
in my local machine I git add the file, then git commit, then git push.
then I moved to the cluster and pulled, and I get the error:
Your branch is ahead of 'origin/master' by 1 commit.modified: main_bam_pipeline.sh
I tried again, maybe I did some mess. in the end I deleted main_bam_pipeline in the cluster and rsynced the whole /sequencing from my local to the cluster.
I hope this is not a big deal.
now the file on the cluster is the same as on my local machine, but still git pull returns the same error as above.
I did so to try the full pipeline on the cluster, I hope I did not mess up anything important...sorry about that
I renamed the old sequencing folder as sequencing_old and cloned again the git repository into a new sequencing folder.
if there's nothing special into the old sequencing folder, we can delete it
I modified main_bam_pipeline.sh to have some sentences in the log, and the bam quality check at the end. I'm having problems in push/pull from the cluster.
in my local machine I
git add
the file, thengit commit
, thengit push
. then I moved to the cluster and pulled, and I get the error:Your branch is ahead of 'origin/master' by 1 commit.
modified: main_bam_pipeline.sh
I tried again, maybe I did some mess. in the end I deleted main_bam_pipeline in the cluster and rsynced the whole /sequencing from my local to the cluster. I hope this is not a big deal. now the file on the cluster is the same as on my local machine, but stillgit pull
returns the same error as above.I did so to try the full pipeline on the cluster, I hope I did not mess up anything important...sorry about that