This code snippet here behaves very odd. You cannot for example specify a global adapter, but then having PHRED scores specified. There is also no global option for PHRED scores (although most people sequence a single FC, then having PHRED scores the same for all samples on it...) - would it be possible to:
document this behaviour accordingly?
add code to add a global PHRED option?
We had data now that had overall PHRED=38 scores, so the tool failed because it considered this to be "too good to be true" (although its verifiable reality...).
This code snippet here behaves very odd. You cannot for example specify a global adapter, but then having PHRED scores specified. There is also no global option for PHRED scores (although most people sequence a single FC, then having PHRED scores the same for all samples on it...) - would it be possible to:
We had data now that had overall PHRED=38 scores, so the tool failed because it considered this to be "too good to be true" (although its verifiable reality...).
x-ref https://github.com/nf-core/smrnaseq/pull/342/files