Is it possible to provide mirbase files via command line instead of just using the hardcoded one of mirbase 21

friedlanderlab / mirtrace

miRTrace

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Is it possible to provide mirbase files via command line instead of just using the hardcoded one of mirbase 21 #3

Closed shashwatsahay closed 4 years ago

wenjingk commented 4 years ago

Hi!

unfortunately, the current version does not support that. You are right, you cannot change the hardcoded miRBase database.

Cheers, Wenjing

wenjingk commented 4 years ago

Hi!

again, I forget to mention you can use custom miRNA, tRNA and rRNA reference database for mapping, which is related to the RNA type plot of miRTrace report. You can find more information in the mirtrace manual. If you have further question, let me know. :)

https://github.com/friedlanderlab/mirtrace/blob/master/release-bundle-includes/doc/manual/mirtrace_manual.pdf

Cheers, Wenjing

shashwatsahay commented 4 years ago

Hi!

Looks like this should solve my problem. Thanks :)

Regards Shashwat