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friend1ws / nanomonsv

SV detection tool for nanopore sequence reads
GNU General Public License v3.0
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position of insertion #20

Closed charliechen912ilovbash closed 2 years ago

charliechen912ilovbash commented 2 years ago

Hello, I observed some insertion output record look like the following: chr1 27087079 + chr1 27087116 - Could you explain why the distance between the start and the end is more than 1 ?

friend1ws commented 2 years ago

Sometimes, insertion and deletion can occur simultaneously. And current nanomonsv can identify these complex SVs only when the deletion is not so large (e.g. ~30bp?). And I would like to tune the algorithm so that it can identify even broader cases.