nanomonsv get with `--single_bnd` fails

friend1ws / nanomonsv

SV detection tool for nanopore sequence reads

GNU General Public License v3.0

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nanomonsv get with `--single_bnd` fails #32

Closed mooomooo131 closed 1 year ago

mooomooo131 commented 1 year ago

Hello there,

I'm using 0.5.0 , my command is:

nanomonsv get --single_bnd --threads 10 output/test_tumour \
--use_racon \
All_Colo829.bam \
GCA_000001405.15_GRCh38_no_alt_analysis_set.fna \
--control_prefix output/test_control \
--control_bam GD_JANFEB_Colo829BL_puregene.dorado_supV400_5mCG5hmCG.60xLongestPass.bam

I am getting the following error:

FileNotFoundError: [Errno 2] No such file or directory: 'output/test_tumour.refined_bp.sbnd.3.txt'

friend1ws commented 1 year ago

Sorry for the detail. Could you change --thread to --process? We do not recommend to use --thread currently..