Open skeremaydin opened 4 months ago
Hi, I am having some difficulties about annotating the nanomonsv outputs. I get this error:
NOTICE: Running with system command <convert2annovar.pl -includeinfo -allsample -withfreq -format vcf4 nanomonsv_somatic.vcf > nanomonsv.avinput> Error: invalid record found in VCF4 file (at least 8 tab-delimited fields expected): <"##FILTER=<ID=PASS,Description=""All filters passed"">" > Error running system command: <convert2annovar.pl -includeinfo -allsample -withfreq -format vcf4 nanomonsv_somatic.vcf > nanomonsv.avinput>
I do not get this kind of errors with other tools' outputs. Could you give me instructions on what I can do?
Hi, I am having some difficulties about annotating the nanomonsv outputs. I get this error:
NOTICE: Running with system command <convert2annovar.pl -includeinfo -allsample -withfreq -format vcf4 nanomonsv_somatic.vcf > nanomonsv.avinput> Error: invalid record found in VCF4 file (at least 8 tab-delimited fields expected): <"##FILTER=<ID=PASS,Description=""All filters passed"">" > Error running system command: <convert2annovar.pl -includeinfo -allsample -withfreq -format vcf4 nanomonsv_somatic.vcf > nanomonsv.avinput>
I do not get this kind of errors with other tools' outputs. Could you give me instructions on what I can do?