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friend1ws / pmsignature

R package for extracting mutation signatures from a list of somatic mutations
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Inconsistencies in getPMSignature documentation #4

Closed funnell closed 9 years ago

funnell commented 9 years ago

Usage

getPMSignature(mutationFeatureData, K, BG = NULL, numInit = 10, tol = 1e-04, maxIter = 10000)

Arguments _
mutationFeatureData the mutation data processed in the function (readMutFile or readRawMutfeatFile)
K the number of mutation signatures
numInit the number of performing calculations with different initial values
tol tolerance for the estimation (when the difference of log-likelihoods become below this value, stop the estimation)
maxIter the maximum number of iteration of estimation
isBG the logical value showing whether a background mutaiton features is included or not
BG0 a background mutaiton feature
friend1ws commented 9 years ago

Thanks! this will be fixed in the next version, which I hope will be available soon.

friend1ws commented 9 years ago

fixed in the new release