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friendsofstrandseq
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mosaicatcher-pipeline
Integrated workflow for SV calling from single-cell Strand-seq data
MIT License
21
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10
forks
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[Bug]: pipeline's checkpoints seem to be malfunctioning
#70
cachedpotato
opened
4 days ago
2
Bump github/super-linter from 4 to 7
#69
dependabot[bot]
opened
2 months ago
0
Weber8thomas/clean conda envs
#68
weber8thomas
closed
3 months ago
0
Weber8thomas/clean conda envs
#67
weber8thomas
closed
3 months ago
0
[Bug]: Ploidy estimation issue
#66
weber8thomas
opened
3 months ago
0
fix: clean conda envs
#65
weber8thomas
closed
4 months ago
0
fix(common): Fix missing publishdir fct in common.smk
#64
weber8thomas
closed
4 months ago
0
fix(config): Fix config version
#63
weber8thomas
closed
4 months ago
0
weber8thomas/fix slurm time issue
#62
weber8thomas
closed
4 months ago
0
2.3.3
#61
weber8thomas
closed
4 months ago
0
Bump actions/checkout from 3.2.0 to 4.1.7
#60
dependabot[bot]
closed
5 months ago
0
Bump github/super-linter from 4 to 6
#59
dependabot[bot]
closed
2 months ago
1
Bump mathieudutour/github-tag-action from 6.1 to 6.2
#58
dependabot[bot]
closed
5 months ago
0
Merge remote-tracking branch 'origin/master' into dev_tmp
#57
weber8thomas
closed
5 months ago
0
Small fixes & update to 2.3.1
#56
weber8thomas
closed
5 months ago
0
[Bug]: Pipeline not working on Snakemake version 8, running without internet connection
#55
fawaz-dabbaghieh
opened
10 months ago
2
2.2.5 with Dockerfile
#54
weber8thomas
closed
10 months ago
0
2.2.5
#53
weber8thomas
closed
10 months ago
0
Watchdog update, jbrowse mode
#52
weber8thomas
closed
10 months ago
0
2.2.4: minor fixes for scNOVA new container mode
#51
weber8thomas
closed
11 months ago
0
2.2.2: IGV genome browsing & fixes
#50
weber8thomas
closed
1 year ago
0
2.2.1: fixes
#49
weber8thomas
closed
1 year ago
0
[Bug]: workflow trying to install BSgenome into Singularity image and failing as a result
#48
oneillkza
closed
1 year ago
4
Version 2.2.0
#47
weber8thomas
closed
1 year ago
0
2.1.3
#46
weber8thomas
closed
1 year ago
0
Revert 36 arbi debug
#45
weber8thomas
closed
1 year ago
0
2.1.2: fix docker memory space limit
#44
weber8thomas
closed
1 year ago
0
2.1.2: Docker fix
#43
weber8thomas
closed
1 year ago
0
2.1.1
#42
weber8thomas
closed
1 year ago
0
Fixing small indexing errors in plot-sv-calls_dev
#41
p-smirnov
closed
1 year ago
1
[Bug]: Single segment chromosomes break calculation of to/from values for BPS in plot-sv-calls_dev.R
#40
p-smirnov
closed
1 year ago
0
[Bug]: chrY assigned a cumulative bin count of 0 due to off by 1 indexing error
#39
p-smirnov
closed
1 year ago
0
Mm10
#38
weber8thomas
closed
1 year ago
0
Revert "Arbi debug"
#37
weber8thomas
closed
1 year ago
0
Arbi debug
#36
WHops
closed
1 year ago
0
Bump actions/checkout from 3.2.0 to 3.5.0
#35
dependabot[bot]
closed
5 months ago
1
2.1.0: multistep normalisation for SV calling
#34
weber8thomas
closed
1 year ago
0
2.0.1: ArbiGent all SV (not only inversion) integration update, scNOVA binding fixes
#33
weber8thomas
closed
1 year ago
0
Bump actions/checkout from 3.2.0 to 3.4.0
#32
dependabot[bot]
closed
1 year ago
1
1.9.1: major update: ArbiGent integration update, 1rst version publishdir for ashleys, normalization fix
#31
weber8thomas
closed
1 year ago
0
1.9.0: major update: ArbiGent integration
#30
weber8thomas
closed
1 year ago
0
1.9.0: major update: ArbiGent integration
#29
weber8thomas
closed
1 year ago
0
Bump actions/checkout from 3.2.0 to 3.3.0
#28
dependabot[bot]
closed
1 year ago
1
1.8.6: visualization update, conda cleaning, list_commands help, linting correction
#27
weber8thomas
closed
1 year ago
0
1.8.6: visualization update, conda cleaning, list_commands help, linting correction
#26
weber8thomas
closed
1 year ago
0
1.8.6: visualization update, conda cleaning, list_commands help, linting correction
#25
weber8thomas
closed
1 year ago
0
1.8.6: visualization update, conda cleaning, list_commands help
#24
weber8thomas
closed
1 year ago
0
[Bug]: Dependency issues with Tabulate 9.0 causes Snakemake 7.14.0 to misbehave
#23
karen-Gg
closed
1 year ago
1
1.8.5: bam/selected folder system update, report update
#22
weber8thomas
closed
1 year ago
0
Version 1.8.4
#21
weber8thomas
closed
2 years ago
0
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