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frisen-lab / TREX

Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq
MIT License
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Factor out an add_common_arguments() function #18

Closed marcelm closed 2 years ago

marcelm commented 2 years ago

The run10x and smartseq2 subcommands share many command-line options. I made some improvements to the the command-line help for run10x in an earlier commit. Instead of re-doing these for the smartseq2 subcommand, move the common options into a separate function.

marcelm commented 2 years ago

I’ve added a couple of more commits that aren’t strictly related to factoring out the function. I would usually open up separate PRs, but the changes are small and dependent on each other.