New enhancements of the code e.g. the filter to remove cloneIDs with low complexity, the quality control run, the --keep_doublets flag, etc., should be available to run10x AND smartseq2/3. Future additions should immediately made available for all 3 positional arguments, it gets messy otherwise
New enhancements of the code e.g. the filter to remove cloneIDs with low complexity, the quality control run, the
--keep_doubletsflag, etc., should be available torun10xANDsmartseq2/3. Future additions should immediately made available for all 3 positional arguments, it gets messy otherwise