Add more colums to clone_sequences.txt and rename to clone_details.txt

frisen-lab / TREX

Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq

MIT License

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Closed marcelm closed 3 weeks ago

marcelm commented 3 weeks ago

Add the average clone size in the log output.
Rename clone_sequences.txt to clone_details.txt.
Add columns n_cells (number of cells) and clone_ids_per_cell (average number of cloneIDs per cell)
Plus some minor refactoring and add some type annotations