I am using the compMUMMer function to evaluate the breakpoint accuracy of callers. In the source code, I found the tag "_EURAF" is taken to update the variable "freq". But I cannot find the tag in the SURVIVOR merged VCF file, as a result the _parsevcf() function will return an empty vector. So, what is exactly "_EURAF" mean or how can I get this value?
Hi Fritz,
I am using the compMUMMer function to evaluate the breakpoint accuracy of callers. In the source code, I found the tag "_EURAF" is taken to update the variable "freq". But I cannot find the tag in the SURVIVOR merged VCF file, as a result the _parsevcf() function will return an empty vector. So, what is exactly "_EURAF" mean or how can I get this value?
Thanks!