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fritzsedlazeck / SURVIVOR

Toolset for SV simulation, comparison and filtering
MIT License
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gzip inputs? #158

Open bbimber opened 2 years ago

bbimber commented 2 years ago

Hello - we're interested in merging VCFs with SURVIVOR. I believe the answer is no, but want to confirm: does survivor support gzipped input or output? Thanks.

fritzsedlazeck commented 2 years ago

Sorry no... I had once a github merge request from a user that would enable this , but it caused a ton of problems/errors. Sorry for that Fritz

bbimber commented 2 years ago

@fritzsedlazeck OK. Be aware, if you run it on a gzipped input, you get an output that if VCF-like, but when you inspect it, it's sort of a weird. hybrid where various parts of garbled.

Could it accept an input and/or output stream? That's another way to approach it.