I have a recent issue with SURVIVOR. The run completes immediately without output or error message. so it is difficult to figure out the problem. because it is recent, my guess is that it might be a sort of library issue. Can someone help me sort it out please?
this is the only output:
$SURVIVOR merge sample_files 1000 2 1 1 0 30 > sample_merged.vcf
File with VCF names and paths
max distance between breakpoints (0-1 percent of length, 1- number of bp)
Minimum number of supporting caller
Take the type into account (1==yes, else no)
Take the strands of SVs into account (1==yes, else no)
Estimate distance based on the size of SV (1==yes, else no).
Minimum size of SVs to be taken into account.
Output VCF filename
Hi,
I have a recent issue with SURVIVOR. The run completes immediately without output or error message. so it is difficult to figure out the problem. because it is recent, my guess is that it might be a sort of library issue. Can someone help me sort it out please?
this is the only output: $SURVIVOR merge sample_files 1000 2 1 1 0 30 > sample_merged.vcf
File with VCF names and paths max distance between breakpoints (0-1 percent of length, 1- number of bp) Minimum number of supporting caller Take the type into account (1==yes, else no) Take the strands of SVs into account (1==yes, else no) Estimate distance based on the size of SV (1==yes, else no). Minimum size of SVs to be taken into account. Output VCF filename
Thanks,