I am trying to merge 4 vcfs from 4 different callers in the same samples (Gridss, manta and lumpy and delly) but the same samples for different callers are not merging in the same sample and instead survivor is creating different columns with the same sample name but adding _1, _2 and _3.
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NET51_TI
NET51_TI_1 NET51_TI_2 NET51_TI_3 NET52_TI NET52_TI_1 NET52_TI_2 NET52_TI_3
When I expect only one NET51_TI for example merging the same SV for the different variants and appending the others in the same sample. Any suggestions?
Hi,
I am trying to merge 4 vcfs from 4 different callers in the same samples (Gridss, manta and lumpy and delly) but the same samples for different callers are not merging in the same sample and instead survivor is creating different columns with the same sample name but adding _1, _2 and _3.
When I expect only one NET51_TI for example merging the same SV for the different variants and appending the others in the same sample. Any suggestions?