fritzsedlazeck / SURVIVOR

Toolset for SV simulation, comparison and filtering
MIT License
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simSV bed output explanation of DEL and INS position #193

Closed charliechen912ilovbash closed 1 year ago

charliechen912ilovbash commented 1 year ago

Hi, I am using simsv and got the bed output. But I am a little confused about the position in bed file, especially for DEL and INS. For example, chr1 10 100 DEL I guess this coordinate is the input ref.fa of simsv ?

But for INS, chr1 10 100 INS Is this coordinate the simulated.fasta ?