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fritzsedlazeck / SURVIVOR

Toolset for SV simulation, comparison and filtering
MIT License
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merge error #198

Open Qijie0615 opened 1 year ago

Qijie0615 commented 1 year ago

These two variations were found in four samples, and when I only used this four-sample vcf to merge, these two variations could be merged into one correctly. However, when I merged with a population (vcf with 4000 samples), these two mutations could not be merged into one. SURVIVOR merge DEL_FileList.list 1000 1 1 1 0 0 repeat.DEL.vcf Looking forward to your reply！

chr8 84700770 DEL_3417 N 591 PASS SUPP=1;SVLEN=-36499;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737242;CIPOS=0,0;CIEND=0,0;STRANDS=+-
chr8 84700556 DEL_3914 N 999 PASS SUPP=3;SVLEN=-36602;SVTYPE=DEL;SVMETHOD=SURVIVOR1.0.7;CHR2=chr8;END=84737218;CIPOS=0,281;CIEND=0,0;STRANDS=+-