Open Machadum opened 2 months ago
Hello, @Machadum which version of sniffles are you using? It seems that you are using sniffles1 We recommend you to switch to sniffles2
Hi thank you for your quick answer. The switch to sniffles2 unfortunately does not work:
conda update sniffles=2.3
Retrieving notices: ...working... done
CondaError: Invalid spec for 'conda update': sniffles=2.3
Use 'conda install' instead.
conda install sniffles=2.3
Channels:
- bioconda
- conda-forge
- defaults
- r
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- sniffles=2.3*
Current channels:
- https://conda.anaconda.org/bioconda
- https://conda.anaconda.org/conda-forge
- defaults
- https://conda.anaconda.org/r
- https://repo.anaconda.com/pkgs/free
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Hi again
I am a newbie. I have modbam files from ONT that I try to call SVs on but I have
Segmentation fault: 11
error. Do you have an idea of what it could be? Also it does not indicate the avg DEL/INS ratios to start with, which worries me a bit.Many thanks for your help