fslaborg / FSharp.Stats

statistical testing, linear algebra, machine learning, fitting and signal processing in F#
https://fslab.org/FSharp.Stats/
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FR: SAM (Significance Analysis of Microarrays) #237

Closed zieglerSe closed 1 year ago

zieglerSe commented 1 year ago

Please reference the issue(s) this PR is related to

Implementing SAM as in FR #236

Please list the changes introduced in this PR

bvenn commented 1 year ago

ping

bvenn commented 1 year ago

Additionally, add a fold change field in the SAM type.

codecov-commenter commented 1 year ago

Codecov Report

Merging #237 (0602ff1) into developer (3aa4c4c) will increase coverage by 1.46%. The diff coverage is 75.90%.

@@              Coverage Diff              @@
##           developer     #237      +/-   ##
=============================================
+ Coverage      43.36%   44.82%   +1.46%     
=============================================
  Files            142      143       +1     
  Lines          14028    14302     +274     
  Branches        1892     1908      +16     
=============================================
+ Hits            6083     6411     +328     
+ Misses          7444     7365      -79     
- Partials         501      526      +25     
Impacted Files Coverage Δ
tests/FSharp.Stats.Tests/Main.fs 0.00% <0.00%> (ø)
src/FSharp.Stats/Testing/SAM.fs 71.68% <71.68%> (+71.68%) :arrow_up:
tests/FSharp.Stats.Tests/Testing.fs 100.00% <100.00%> (ø)
src/FSharp.Stats/SpecialFunctions/Erf.fs 98.03% <0.00%> (-1.97%) :arrow_down:
src/FSharp.Stats/Fitting/NonLinearRegression.fs 16.37% <0.00%> (-0.50%) :arrow_down:
tests/FSharp.Stats.Tests/SpecialFunctions.fs 100.00% <0.00%> (ø)
src/FSharp.Stats/Signal/QQPlot.fs 0.00% <0.00%> (ø)
src/FSharp.Stats/AlgTypes.fs 29.34% <0.00%> (+0.13%) :arrow_up:
tests/FSharp.Stats.Tests/Distributions.fs 84.46% <0.00%> (+0.42%) :arrow_up:
... and 5 more

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