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fstrozzi / Fastool

Simple and quick FastQ and FastA tool for file reading and conversion
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Not reading .gz files #3

Open forsterr opened 10 years ago

forsterr commented 10 years ago

I had to reinstall fastool. My previous installation was converting .fastq.gz files to fasta. The reinstall returns Sequences parsed: 0 It works after manually gunzip input files to fastq

fstrozzi commented 10 years ago

Hi, reading directly from gzipped files was dropped in latest release due to problems with newer and older zlib versions. Please check https://github.com/fstrozzi/Fastool/releases/tag/0.1.4 Fastool can also read from stdin so the recommended way is to use pipes and something like zcat or pigz to read your compressed FastQ files.

forsterr commented 10 years ago

Thanks for your quick reply!

Bob

From: Francesco Strozzi [mailto:notifications@github.com] Sent: July-11-14 9:54 AM To: fstrozzi/Fastool Cc: Forster, Robert Subject: Re: [Fastool] Not reading .gz files (#3)

Hi, reading directly from gzipped files was dropped in latest release due to problems with newer and older zlib versions. Please check https://github.com/fstrozzi/Fastool/releases/tag/0.1.4 Fastool can also read from stdin so the recommended way is to use pipes and something like zcat or pigz to read your compressed FastQ files.

— Reply to this email directly or view it on GitHubhttps://github.com/fstrozzi/Fastool/issues/3#issuecomment-48748058.