GLSS-H2 aliquot barcodes without readgroups/file entries

[fsvarn]

While running the alignment pipeline on the renamed GLSS-H2 samples, I got an error stating that there were no entries in the files or readgroups table for the below aliquots. The original aliquots table had these entries in it with their barcode name as -02D- instead of -01D-. We need to track down the file location/readgroup information for each one of these and add them to their respective metadata tables if possible.

GLSS-HF-CB66-TP-01D-WXS-ES10PQ
GLSS-HF-CB66-R1-01D-WXS-6ONXCJ
GLSS-HF-CB66-R2-01D-WXS-HW7QR7
GLSS-HF-DE05-NB-01D-WXS-SCF2QP
GLSS-HF-4D9A-NB-01D-WXS-J7NPUQ
GLSS-HF-CB66-NB-01D-WXS-H30643
GLSS-HF-DF35-NB-01D-WXS-P9JGOY
GLSS-HF-4B46-NB-01D-WXS-1SIANG
GLSS-HF-EE74-NB-01D-WXS-O6GVHU
GLSS-HF-1067-NB-01D-WXS-Z5IVLR
GLSS-HF-BCDE-NB-01D-WXS-HKHJ3P
GLSS-HF-1067-R2-01D-WXS-88MMQX
GLSS-HF-BCDE-TP-01D-WXS-DKMKV2
GLSS-HF-BCDE-R3-01D-WXS-9MBV7E
GLSS-HF-3050-R1-02D-WXS-4SMVD3

[fsvarn]

I think the most straightforward way to go about this may be to delete all the H2-entries from the aliquots table and then re-upload each table from the beginning using the master files after making sure they are all labelled correctly.

[fsvarn]

Primary rules if we choose to reupload all H2 samples:

• No files from samples that are already in GLASS (to avoid altering the original mutation calls)
• Make sure all DNA/RNA barcodes match the methylation barcodes given to us up to the analyte indicator and uuid. So GLSS-HF-1DDC-TP-01M-5MC-BC0FE1 would correspond to GLSS-HF-1DDC-TP-01D-DNA-12345

[fsvarn]

Closing this issue. To be safe, we removed all H2 entries from the aliquots table and then reuploaded the new versions of the tables.