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fteufel / signalp-6.0

Multi-class signal peptide prediction and structure decoding model.
https://services.healthtech.dtu.dk/service.php?SignalP-6.0
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Mode `slow` not found, running `slow-sequential` instead. #13

Closed barthelemymp closed 1 year ago

barthelemymp commented 1 year ago

The mode slow does not seem to work: my command is: signalp6 --fastafile /home/barthelemy/beta/A.fasta --organism other --output_dir /home/barthelemy/beta/signalP_out --format txt --mode slow

Does slow-sequential produce the same output as slow ?

best

barthelemy

fteufel commented 1 year ago

Hi Barthelemy, This is fine, it gives the same output. We decided to ship a version that runs the slow model sequentially, as it's too big for most systems when running in parallel.