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fujitsu / oss-patches-for-a64fx

"oss-patches-for-a64fx" is a set of patches for A64FX for various open source software.
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spack install lammps fails #1

Closed PabloRodenas closed 3 years ago

PabloRodenas commented 3 years ago

I am testing spack for installing different software on a aarch64 machine. My spack config files are based on the Spack/README.md. First, I tried to use spack with cross-compilation on login's node but it fails on the tests part of the very first dependency. So now I am executing spack directly on a compute node.

Trying to install LAMMPS, spack fails on the kim-api dependency when applying the fujitsu_add_link_flags.patch:

spack install lammps @20190807 %fj ... ==> Installing kim-api-2.2.1-uyd3ce3m7kldqucdnflqkbkfjm7cytpv ==> No binary for kim-api-2.2.1-uyd3ce3m7kldqucdnflqkbkfjm7cytpv found: installing from source ==> Using cached archive:

/apps/SPACK/spack/var/spack/cache/_source-cache/archive/1d/1d5a12928f7e885ebe74759222091e48a7e46f77e98d9147e26638c955efbc8e.txz

2 out of 2 hunks FAILED -- saving rejects to file cmake/Modules/DefaultCompilerFlags.cmake.rej ==> Patch /apps/SPACK/spack/var/spack/repos/builtin/packages/kim-api/fujitsu_add_link_flags.patch failed. ==> Error: ProcessError: Command exited with status 1: '/usr/bin/patch' '-s' '-p' '1' '-i' '/apps/SPACK/spack/var/spack/repos/builtin/packages/kim-api/fujitsu_add_link_flags.patch' '-d' '.' ==> Warning: Skipping build of lammps-20190807-v7f3r7w7zqifijjqwkfz6jhjktasm7lw since kim-api-2.2.1-uyd3ce3m7kldqucdnflqkbkfjm7cytpv failed ==> Error: lammps-20190807-v7f3r7w7zqifijjqwkfz6jhjktasm7lw: Package was not installed ==> Error: Installation request failed. Refer to reported errors for failing package(s).

I've interactively tested the command and seems that the lines specified on the fujitsu_add_link_flags.patch are totally different of the content of the cmake/Modules/DefaultCompilerFlags.cmake.

If you can help me to compile LAMMPS on aarch64 would be really helpful.

Thanks in advance.

m-shunji commented 3 years ago

The fujitsu_add_link_flags.patch seems to be incompatible with the newest version of kim-api. Could you try specifying older version by the following command ? spack install lammps @20190807 ^kim-api@2.1.3 %fj

We didn't encounter this problem because kim-api was added as lammps dependencies only recently. We will update information after confirming this workaround works well.

PabloRodenas commented 3 years ago

I got have LAMMPS installed! I confirm that your suggestion worked perfectly. Many thanks for your answer.