Closed znorgaard closed 1 month ago
All modified and coverable lines are covered by tests :white_check_mark:
Project coverage is 95.62%. Comparing base (
9a4b01d
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Closes #992.
This PR adds a new
isConsensusRead
method toUmis.scala
which is then used inCollectDuplexSeqMetrics
to raise an exception if the first record is a consensus record.In addition to the unit tests, I ran this on a consensus BAM locally and generated the expected error message. Running on the preceding grouped BAM generated the expected outputs as well.